「PCR primers cp rbcL」の版間の差分
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= [[PCR_primers|PCR primers]] = | = [[PCR_primers|PCR primers]] = | ||
== chloroplast == | == chloroplast == | ||
− | === rbcL === | + | === rbcL (atpB-rbcL-trnR-zfpA) === |
{| class="wikitable" style="width:90%; margin:0 2em 0 2em; background-color:#d1d1a5; text-align:left" | {| class="wikitable" style="width:90%; margin:0 2em 0 2em; background-color:#d1d1a5; text-align:left" | ||
|+ style="text-align:left" | Table. Sequences (5’–3’) of synthetic primers used for PCR amplification and sequencing of the rbcL gene. The primer numbers from 5’ end correspond to rough positions in the sequence of ''Marchantia polymorpha'' (Ohyama et al. 1986). | |+ style="text-align:left" | Table. Sequences (5’–3’) of synthetic primers used for PCR amplification and sequencing of the rbcL gene. The primer numbers from 5’ end correspond to rough positions in the sequence of ''Marchantia polymorpha'' (Ohyama et al. 1986). | ||
47行目: | 47行目: | ||
| ATACCAAAGA TGTTTTTTTA TAAG | | ATACCAAAGA TGTTTTTTTA TAAG | ||
| [[Tsubota_Nakao_Arikawa_Yamaguchi_Higuchi_Deguchi_Seki_1999|Tsubota et al. (1999)]] | | [[Tsubota_Nakao_Arikawa_Yamaguchi_Higuchi_Deguchi_Seki_1999|Tsubota et al. (1999)]] | ||
+ | | Bryopytes | ||
+ | |- | ||
+ | | rbcL | ||
+ | | Forward | ||
+ | | rbcL-26Fmas | ||
+ | | AAGTCCCTCC CTACGAATCAA | ||
+ | | [[Masuzaki_Shimamura_Furuki_Tsubota_Yamaguchi_Haji_Deguchi_2010|Masuzaki et al. (2010)]] | ||
+ | | Bryopytes | ||
+ | |- | ||
+ | | rbcL | ||
+ | | Forward | ||
+ | | HrL1 | ||
+ | | ATGTCACCAC AAACGGAGAC TAAAGCAGG | ||
+ | | [[Masuzaki_Shimamura_Furuki_Tsubota_Yamaguchi_Haji_Deguchi_2010|Masuzaki et al. (2010)]] | ||
| Bryopytes | | Bryopytes | ||
|- | |- | ||
58行目: | 72行目: | ||
| rbcL | | rbcL | ||
| Forward | | Forward | ||
− | | | + | | rbcL39Fmas |
− | | | + | | AAAGCTGGTG TTAAAGATTA |
+ | | [[Masuzaki_Shimamura_Furuki_Tsubota_Yamaguchi_Haji_Deguchi_2010|Masuzaki et al. (2010)]] | ||
+ | | Bryopytes | ||
+ | |- | ||
+ | | rbcL | ||
+ | | Forward | ||
+ | | rbcL111Fmas | ||
+ | | GCAGCATTTC GTATGAC | ||
| [[Masuzaki_Shimamura_Furuki_Tsubota_Yamaguchi_Haji_Deguchi_2010|Masuzaki et al. (2010)]] | | [[Masuzaki_Shimamura_Furuki_Tsubota_Yamaguchi_Haji_Deguchi_2010|Masuzaki et al. (2010)]] | ||
| Bryopytes | | Bryopytes | ||
103行目: | 124行目: | ||
| TGTCTTCGTG GTGGAC | | TGTCTTCGTG GTGGAC | ||
| [[Tsubota_Nakao_Arikawa_Yamaguchi_Higuchi_Deguchi_Seki_1999|Tsubota et al. (1999)]] | | [[Tsubota_Nakao_Arikawa_Yamaguchi_Higuchi_Deguchi_Seki_1999|Tsubota et al. (1999)]] | ||
+ | | Bryopytes | ||
+ | |- | ||
+ | | rbcL | ||
+ | | Forward | ||
+ | | rbcL634Fmas | ||
+ | | ATGCGTTGGA GAGA | ||
+ | | [[Masuzaki_Shimamura_Furuki_Tsubota_Yamaguchi_Haji_Deguchi_2010|Masuzaki et al. (2010)]] | ||
| Bryopytes | | Bryopytes | ||
|- | |- | ||
118行目: | 146行目: | ||
| Tsubota et al. (2001) | | Tsubota et al. (2001) | ||
| Bryopytes | | Bryopytes | ||
+ | |- | ||
+ | | rbcL | ||
+ | | Forward | ||
+ | | rbcL920Fmas | ||
+ | | CATGGTATGC ATTTCCGTGT | ||
+ | | [[Masuzaki_Shimamura_Furuki_Tsubota_Yamaguchi_Haji_Deguchi_2010|Masuzaki et al. (2010)]] | ||
+ | | Bryopytes (Liverworts) | ||
|- | |- | ||
| rbcL | | rbcL | ||
243行目: | 278行目: | ||
| TGCAGTAAAA CCACCTG | | TGCAGTAAAA CCACCTG | ||
| [[Tsubota_Nakao_Arikawa_Yamaguchi_Higuchi_Deguchi_Seki_1999|Tsubota et al. (1999)]] | | [[Tsubota_Nakao_Arikawa_Yamaguchi_Higuchi_Deguchi_Seki_1999|Tsubota et al. (1999)]] | ||
+ | | Bryopytes | ||
+ | |- | ||
+ | | rbcL | ||
+ | | Forward | ||
+ | | rbcL650Rmas | ||
+ | | CGATCTCTCC AACGCA | ||
+ | | [[Masuzaki_Shimamura_Furuki_Tsubota_Yamaguchi_Haji_Deguchi_2010|Masuzaki et al. (2010)]] | ||
| Bryopytes | | Bryopytes | ||
|- | |- | ||
250行目: | 292行目: | ||
| GTGAAATCAA GTCCACCACG | | GTGAAATCAA GTCCACCACG | ||
| [[Tsubota_Nakao_Arikawa_Yamaguchi_Higuchi_Deguchi_Seki_1999|Tsubota et al. (1999)]] | | [[Tsubota_Nakao_Arikawa_Yamaguchi_Higuchi_Deguchi_Seki_1999|Tsubota et al. (1999)]] | ||
+ | | Bryopytes | ||
+ | |- | ||
+ | | rbcL | ||
+ | | Forward | ||
+ | | rbcL302Rmas | ||
+ | | ACATAAGCAA TATATTGATT | ||
+ | | [[Masuzaki_Shimamura_Furuki_Tsubota_Yamaguchi_Haji_Deguchi_2010|Masuzaki et al. (2010)]] | ||
| Bryopytes | | Bryopytes | ||
|- | |- | ||
264行目: | 313行目: | ||
| GGTAAGTCCA TCAGTCCAAA C | | GGTAAGTCCA TCAGTCCAAA C | ||
| [[Tsubota_Nakao_Arikawa_Yamaguchi_Higuchi_Deguchi_Seki_1999|Tsubota et al. (1999)]] | | [[Tsubota_Nakao_Arikawa_Yamaguchi_Higuchi_Deguchi_Seki_1999|Tsubota et al. (1999)]] | ||
+ | | Bryopytes | ||
+ | |- | ||
+ | | rbcL | ||
+ | | Forward | ||
+ | | rbcL128Rmas | ||
+ | | GTCATACGAA ATGCTGC | ||
+ | | [[Masuzaki_Shimamura_Furuki_Tsubota_Yamaguchi_Haji_Deguchi_2010|Masuzaki et al. (2010)]] | ||
| Bryopytes | | Bryopytes | ||
|} | |} |
2013年9月29日 (日) 00:49時点における版
広島大学 > デジタル自然史博物館 > 植物 > コケ植物(蘚苔類) > 情報
PCR primers
chloroplast
rbcL (atpB-rbcL-trnR-zfpA)
Analyzed region | Forward / Reverse | Primer name | Sequence (5'–3') | References | For |
rbcL | Forward | atpB1011 | GATCTACTAC TTTAATTCCT GT | Tsubota et al. (1999) | Bryopytes |
rbcL | Forward | atpB370 | AGTTGAATCT AAAGGATCTA C | Tsubota et al. (1999) | Bryopytes |
rbcL | Forward | atbB175R | TGTTGAACTT CACAAGTAAC A | Manhart (1994) | Bryopytes |
rbcL | Forward | rbcL−130 | ACAATGATAC TGTTTGTTAT AG | Tsubota et al. (1999) | Bryopytes |
rbcL | Forward | rbcL−73 | ATACCAAAGA TGTTTTTTTA TAAG | Tsubota et al. (1999) | Bryopytes |
rbcL | Forward | rbcL-26Fmas | AAGTCCCTCC CTACGAATCAA | Masuzaki et al. (2010) | Bryopytes |
rbcL | Forward | HrL1 | ATGTCACCAC AAACGGAGAC TAAAGCAGG | Masuzaki et al. (2010) | Bryopytes |
rbcL | Forward | rbcL7 | TGGATTTAAA GCTGGTGTTA AAG | Tsubota et al. (1999) | Bryopytes |
rbcL | Forward | rbcL39Fmas | AAAGCTGGTG TTAAAGATTA | Masuzaki et al. (2010) | Bryopytes |
rbcL | Forward | rbcL111Fmas | GCAGCATTTC GTATGAC | Masuzaki et al. (2010) | Bryopytes |
rbcL | Forward | rbcL152 | GAATCCTCCA CTGGTACATG | Tsubota et al. (1999) | Bryopytes |
rbcL | Forward | rbcL218h | GACGATGCTA TGATCTCGAA GC | Tsubota et al. (2000) | Bryopytes |
rbcL | Forward | rbcL256 | GCTATGATCT TGAAGCAGTT CCTGGAGAAG | Tsubota et al. (2000) | Bryopytes |
rbcL | Forward | rbcL265 | ATTGCTTATG TTGCTTATCC | Tsubota et al. (1999) | Bryopytes |
rbcL | Forward | rbcL557 | GGTAGAGCTG TATATGAATG TCTTCGTGGT GG | Tsubota et al. (2000) | Bryopytes |
rbcL | Forward | rbcL549 | TGTCTTCGTG GTGGAC | Tsubota et al. (1999) | Bryopytes |
rbcL | Forward | rbcL634Fmas | ATGCGTTGGA GAGA | Masuzaki et al. (2010) | Bryopytes |
rbcL | Forward | rbcL862 | CAATGCATGC AGTTATTGAC | Tsubota et al. (1999) | Bryopytes |
rbcL | Forward | rbcL919G | CATGGTATGC ATTTCCGTGT A | Tsubota et al. (2001) | Bryopytes |
rbcL | Forward | rbcL920Fmas | CATGGTATGC ATTTCCGTGT | Masuzaki et al. (2010) | Bryopytes (Liverworts) |
rbcL | Forward | rbcL921G | GGTATGCATT TCCGTGTATT AGC | Tsubota et al. (2001) | Bryopytes |
rbcL | Forward | rbcL968G | GAGATCATAT TCACGCTGGT AC | Tsubota et al. (2001) | Bryopytes |
rbcL | Forward | rbcL1117 | GGTATTCATG TTTGGC | Tsubota et al. (1999) | Bryopytes |
rbcL | Forward | rbcL1220 | GGAGCAGTTG CTAATAGAG | Tsubota et al. (1999) | Bryopytes |
rbcL | Forward | rbcL1276 | GGACGTGATC TTGCTCG | Tsubota et al. (1999) | Bryopytes |
rbcL | Reverse | zfpA546R | ATGATATCCA CATTCTTCAC A | Tsubota et al. (1999) | Bryopytes |
rbcL | Reverse | trnRn | GGGTTAGAAG GGATTCGAAC CCTTGAC | Manhart (1994); Tsubota et al. (1999) | Bryopytes |
rbcL | Reverse | trnR66R | GAAGGGATTC GAACCCTTG | Tsubota et al. (1999) | Bryopytes |
rbcL | Reverse | trnR24R | CTCTAATCCA CTGAGCTACA | Tsubota et al. (1999) | Bryopytes |
rbcL | Reverse | rbcL1346hR | GCAGCTAATT CAGGACTCC | Tsubota et al. (1999) | Bryopytes |
rbcL | Reverse | rbcL1301RL | CTTCATTACG TGCTTGTACA CAAGCTTCTA | Inoue et al. (2011) | Bryopytes |
rbcL | Reverse | rbcL1145R | TTAATGCTGG CATATGCCAA AC | Tsubota et al. (1999) | Bryopytes |
rbcL | Reverse | rbcL1098R | AACACCTGGT AAAGAAACC | Tsubota et al. (1999) | Bryopytes |
rbcL | Reverse | ArbcL-MR | TGACGTTCTC CTTCAAGTTT ACCTACTAC | Murakami et al. (1999) | Ferns, Bryopytes |
rbcL | Reverse | rbcL989R | CTACGGTACC AGCGTGAATA TGGTCTCCAC CGG | Tsubota et al. (2000) | Bryopytes |
rbcL | Reverse | rbcL957R | GCGTGAATAT GGTCTCCACC | Tsubota et al. (1999) | Bryopytes |
rbcL | Reverse | rbcL804hR | TGCAGTAAAA CCACCTG | Tsubota et al. (1999) | Bryopytes |
rbcL | Forward | rbcL650Rmas | CGATCTCTCC AACGCA | Masuzaki et al. (2010) | Bryopytes |
rbcL | Reverse | rbcL600R | GTGAAATCAA GTCCACCACG | Tsubota et al. (1999) | Bryopytes |
rbcL | Forward | rbcL302Rmas | ACATAAGCAA TATATTGATT | Masuzaki et al. (2010) | Bryopytes |
rbcL | Reverse | rbcL270R | GCAATATATT GATTTTCTTC TCCAG | Tsubota et al. (1999) | Bryopytes |
rbcL | Reverse | rbcL199R | GGTAAGTCCA TCAGTCCAAA C | Tsubota et al. (1999) | Bryopytes |
rbcL | Forward | rbcL128Rmas | GTCATACGAA ATGCTGC | Masuzaki et al. (2010) | Bryopytes |
References
- Tsubota, H., N. Nakao, T. Arikawa, T. Yamaguchi, M. Higuchi, H. Deguchi & T. Seki. 1999. A preliminary phylogeny of Hypnales (Musci) as inferred from chloroplast rbcL sequence data. Bryol. Res. 7: 233-248. pdf
- Tsubota, H., N. Nakao, T. Yamaguchi, T. Seki & H. Deguchi. 2000. Preliminary phylogenetic relationships of the genus Brotherella and its allied genera (Hypnales, Musci) based on chloroplast rbcL sequence data. J. Hattori Bot. Lab. 88: 79-99. Abstract
- Tsubota, H., H. Akiyama, T. Yamaguchi & H. Deguchi. 2001. Molecular phylogeny of the Sematophyllaceae (Hypnales, Musci) based on chloroplast rbcL sequences. J. Hattori Bot. Lab. 90: 221-240.
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