PCR primers cp rbcL
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PCR primers
chloroplast
rbcL (atpB-rbcL-trnR-zfpA)
Analyzed region | Forward / Reverse | Primer name | Sequence (5'–3') | References | For |
rbcL | Forward | atpB1011 | GATCTACTAC TTTAATTCCT GT | Tsubota et al. (1999) | Bryopytes |
rbcL | Forward | atpB370 | AGTTGAATCT AAAGGATCTA C | Tsubota et al. (1999) | Bryopytes |
rbcL | Forward | atbB175R | TGTTGAACTT CACAAGTAAC A | Manhart (1994) | Bryopytes |
rbcL | Forward | rbcL−130 | ACAATGATAC TGTTTGTTAT AG | Tsubota et al. (1999) | Bryopytes, Vascular plants (Sisymbrium etc.) |
rbcL | Forward | rbcL−73 | ATACCAAAGA TGTTTTTTTA TAAG | Tsubota et al. (1999) | Bryopytes |
rbcL | Forward | rbcL-26Fmas[1] | AAGTCCCTCC CTACGAATCAA | Masuzaki et al. (2010) | Bryopytes |
rbcL | Forward | rbcL-26Fh[1] | TATTAATTGA TTTGTAGGGA GG | Masuzaki et al. (2011) | Bryopytes |
rbcL | Forward | HrL1 | ATGTCACCAC AAACGGAGAC TAAAGCAGG | Masuzaki et al. (2010) | Bryopytes, Vascular plants (Sisymbrium etc.) |
rbcL | Forward | rbcL7 | TGGATTTAAA GCTGGTGTTA AAG | Tsubota et al. (1999) | Bryopytes, Vascular plants (Sisymbrium etc.) |
rbcL | Forward | rbcL39Fmas | AAAGCTGGTG TTAAAGATTA | Masuzaki et al. (2010) | Bryopytes |
rbcL | Forward | rbcL111Fmas | GCAGCATTTC GTATGAC | Masuzaki et al. (2010) | Bryopytes |
rbcL | Forward | rbcL152 | GAATCCTCCA CTGGTACATG | Tsubota et al. (1999) | Bryopytes |
rbcL | Forward | rbcL218h | GACGATGCTA TGATCTCGAA GC | Tsubota et al. (2000) | Bryopytes |
rbcL | Forward | rbcL256 | GCTATGATCT TGAAGCAGTT CCTGGAGAAG | Tsubota et al. (2000) | Bryopytes |
rbcL | Forward | rbcL265 | ATTGCTTATG TTGCTTATCC | Tsubota et al. (1999) | Bryopytes |
rbcL | Forward | rbcL333mas | AATCAATATA TTGCTTATGT | Masuzaki et al. (2011) | Bryopytes |
rbcL | Forward | rbcL557 | GGTAGAGCTG TATATGAATG TCTTCGTGGT GG | Tsubota et al. (2000) | Bryopytes |
rbcL | Forward | rbcL549 | TGTCTTCGTG GTGGAC | Tsubota et al. (1999) | Bryopytes, Vascular plants (Sisymbrium etc.) |
rbcL | Forward | rbcL634Fmas | ATGCGTTGGA GAGA | Masuzaki et al. (2010) | Bryopytes |
rbcL | Forward | rbcL862 | CAATGCATGC AGTTATTGAC | Tsubota et al. (1999) | Bryopytes, Vascular plants (Sisymbrium etc.) |
rbcL | Forward | rbcL919G | CATGGTATGC ATTTCCGTGT A | Tsubota et al. (2001) | Bryopytes |
rbcL | Forward | rbcL920Fmas | CATGGTATGC ATTTCCGTGT | Masuzaki et al. (2010) | Bryopytes (Liverworts) |
rbcL | Forward | rbcL921G | GGTATGCATT TCCGTGTATT AGC | Tsubota et al. (2001) | Bryopytes, Vascular plants (Sisymbrium etc.) |
rbcL | Forward | rbcL968G | GAGATCATAT TCACGCTGGT AC | Tsubota et al. (2001) | Bryopytes |
rbcL | Forward | rbcL1117 | GGTATTCATG TTTGGC | Tsubota et al. (1999) | Bryopytes, Vascular plants (Sisymbrium etc.) |
rbcL | Forward | rbcL1220 | GGAGCAGTTG CTAATAGAG | Tsubota et al. (1999) | Bryopytes |
rbcL | Forward | rbcL1276 | GGACGTGATC TTGCTCG | Tsubota et al. (1999) | Bryopytes |
rbcL | Reverse | zfpA546R | ATGATATCCA CATTCTTCAC A | Tsubota et al. (1999) | Bryopytes, Vascular plants (Sisymbrium etc.) |
rbcL | Reverse | trnRn | GGGTTAGAAG GGATTCGAAC CCTTGAC | Manhart (1994); Tsubota et al. (1999) | Bryopytes, Vascular plants (Sisymbrium etc.) |
rbcL | Reverse | trnR66R | GAAGGGATTC GAACCCTTG | Tsubota et al. (1999) | Bryopytes |
rbcL | Reverse | trnR24R | CTCTAATCCA CTGAGCTACA | Tsubota et al. (1999) | Bryopytes |
rbcL | Reverse | rbcL1346hR | GCAGCTAATT CAGGACTCC | Tsubota et al. (1999) | Bryopytes |
rbcL | Reverse | rbcL1301RL | CTTCATTACG TGCTTGTACA CAAGCTTCTA | Inoue et al. (2011) | Bryopytes, Vascular plants (Sisymbrium etc.) |
rbcL | Reverse | rbcL1145R | TTAATGCTGG CATATGCCAA AC | Tsubota et al. (1999) | Bryopytes, Vascular plants (Sisymbrium etc.) |
rbcL | Reverse | rbcL1098R | AACACCTGGT AAAGAAACC | Tsubota et al. (1999) | Bryopytes |
rbcL | Reverse | ArbcL-MR | TGACGTTCTC CTTCAAGTTT ACCTACTAC | Murakami et al. (1999) | Ferns, Bryopytes |
rbcL | Reverse | rbcL989R | CTACGGTACC AGCGTGAATA TGGTCTCCAC CGG | Tsubota et al. (2000) | Bryopytes |
rbcL | Reverse | rbcL957R | GCGTGAATAT GGTCTCCACC | Tsubota et al. (1999) | Bryopytes |
rbcL | Forward | HrL911R[2] | Masuzaki et al. (2011) | Bryopytes | |
rbcL | Reverse | rbcL804hR | TGCAGTAAAA CCACCTG | Tsubota et al. (1999) | Bryopytes, Vascular plants (Sisymbrium etc.) |
rbcL | Forward | rbcL650Rmas | CGATCTCTCC AACGCA | Masuzaki et al. (2010) | Bryopytes, Vascular plants (Sisymbrium etc.) |
rbcL | Reverse | rbcL600R[3] | GTGAAATCAA GTCCACCACG | Tsubota et al. (1999) | Bryopytes, Vascular plants (Sisymbrium etc.) |
rbcL | Forward | rbcL302Rmas | ACATAAGCAA TATATTGATT | Masuzaki et al. (2010) | Bryopytes |
rbcL | Reverse | HrL260R[4] | ATATCATAGC ATCGACCTTT GTAACGATC | Inoue et al. (2011) | Bryopytes, Vascular plants (Sisymbrium etc.) |
rbcL | Reverse | rbcL270R | GCAATATATT GATTTTCTTC TCCAG | Tsubota et al. (1999) | Bryopytes |
rbcL | Reverse | rbcL199R | GGTAAGTCCA TCAGTCCAAA C | Tsubota et al. (1999) | Bryopytes |
rbcL | Forward | rbcL128Rmas | GTCATACGAA ATGCTGC | Masuzaki et al. (2010) | Bryopytes |
脚注
- ↑ 1.0 1.1 The PCR primer "rbcL-26Fmas" of Table 1 in Masuzaki et al. (2010a) was published with the sequences based on mistranscription of the sequences data, which should be rectified as "5'-TATTAATTGA TTTGTAGGGA GG-3'". In avoiding future confusion we gave a new name to the sequences (rbcL-26Fh: 5'-TATTAATTGA TTTGTAGGGA GG-3').
- ↑ Masuzaki et al. (2011)のHrL911Rの配列は5'-CGTGCAATGC ATGCAGTTAT TGATAGACA-3'となっているが,誤り.
- ↑ Masuzaki et al. (2011)のrbcL600Rの配列は5'-CGTGGTGGAC TTGATTTCAC-3'となっているが,誤り.
- ↑ Inoue et al. (2011)では,Masuzaki et al. (2010)が初出となっているが,実際にはInoue et al. (2011)が初出.
References
- Masuzaki, H., Shimamura, M., Furuki, T., Tsubota, H., Yamaguchi, T., A. M., Haji Mohamed & Deguchi, H. 2010. Systematic position of the enigmatic liverwort Mizutania (Mizutaniaceae, Marchantiophyta) inferred from molecular phylogenetic analyses. Taxon 59(2): 448-458.
- Tsubota, H., N. Nakao, T. Arikawa, T. Yamaguchi, M. Higuchi, H. Deguchi & T. Seki. 1999. A preliminary phylogeny of Hypnales (Musci) as inferred from chloroplast rbcL sequence data. Bryol. Res. 7: 233-248. pdf
- Tsubota, H., N. Nakao, T. Yamaguchi, T. Seki & H. Deguchi. 2000. Preliminary phylogenetic relationships of the genus Brotherella and its allied genera (Hypnales, Musci) based on chloroplast rbcL sequence data. J. Hattori Bot. Lab. 88: 79-99. Abstract
- Tsubota, H., H. Akiyama, T. Yamaguchi & H. Deguchi. 2001. Molecular phylogeny of the Sematophyllaceae (Hypnales, Musci) based on chloroplast rbcL sequences. J. Hattori Bot. Lab. 90: 221-240.
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