PCR primers

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PCR primers

Plants & Algae

chloroplast

nuclear

Fungi & Lichens

Bacteria

16S rRNA gene


PCR primers

chloroplast

rbcL (atpB-rbcL-trnR-zfpA)

rps4trnTtrnLtrnF

matK

Table. Primers used for PCR amplification and sequencing
Analyzed region Forward / Reverse Primer name Sequence (5'–3') References For
trnK intron (including matK) trnK [tRNA-Lys(UAA)exon1] CCGACTAGTT CCGGGTTCGA Demesure et al. (1995) Bryophytes (Leucobryum, Oguri et al. 2013)
trnK aF ARWTTCATCC AAACCATTGA CAAGG Oguri et al. (2013) Bryophytes (Leucobryum, Oguri et al. 2013)
matK 410F TATCAATCTA TTCATTCYGT ATTTCCTTTT Oguri et al. (2013) Bryophytes (Leucobryum, Oguri et al. 2013)
matK 410R AAAAGGAAAT ACRGAATGAA TAGATTGATA Oguri et al. (2013) Bryophytes (Leucobryum, Oguri et al. 2013)
trnK aR ATTGCACACG GCTTTCTCTA TGT Oguri et al. (2013) Bryophytes (Leucobryum, Oguri et al. 2013)
trnK [tRNA-Lys(UAA)exon2] CAACGGTAGA GTACTCGGCT TTTA Demesure et al. (1995) Bryophytes (Leucobryum, Oguri et al. 2013)

rpl16 G2 intron

Table. Primers used for PCR amplification and sequencing
Analyzed region Forward / Reverse Primer name Sequence (5'–3') References For
rpl16 G2 intron Forward F71 GCTATGCTTAGTGTGTGACTCGTTG Jordan et al. (1996) Vascular plants, Bryophytes (Jordan et al. 1996, Olsson et al. 2009)
rpl16 G2 intron Forward F435 CTCAAAAAGGTAAAGAGCCCTGAGT Jordan et al. (1996) Vascular plants (Jordan et al. 1996)
rpl16 G2 intron Reverse rpl16R GTAATCCAAGCTGGTTCAAGTGC Olsson et al. (2009) Bryophytes (Olsson et al. 2009)
rpl16 G2 intron Reverse R1661 CGTACCCATATTTTTCCACCACGAC Jordan et al. (1996) Vascular plants (Jordan et al. 1996)
rpl16 G2 intron Reverse R434 CTCAGGGCTCTTTACCTTTTTGAGT Jordan et al. (1996) Vascular plants (Jordan et al. 1996)

trnM-trnV [trnM-trnV intergenic region including trnV intron]

Table. Primers used for PCR amplification and sequencing
Analyzed region Forward / Reverse Primer name Sequence (5'–3') References For
trnM-trnV Forward trnMF GCGATACTCTAAACCACTGAG Werner et al. (2009) Bryophytes (Werner et al. 2009)
trnM-trnV Reverse trnVR TYGAACCGTAGACATTCTCGG Werner et al. (2009) Bryophytes (Werner et al. 2009)

psbA-trnH

trnG(UCC) G2 intron [trnG(UCC) G2 intron]

Table. Primers used for PCR amplification and sequencing
Analyzed region Forward / Reverse Primer name Sequence (5'–3') References For
trnG(UCC) G2 intron Forward trnRUCU9Fi CCTCTGTCCTATCCATTAGACG Amamoto et al. (2022) Bryophytes (Amamoto et al. 2022)
trnG(UCC) G2 intron Forward trnG–F ACCCGCATCGTTAGCTTG Pacak & Szweykowska–Kulińska (2000) Bryophytes (Pacak & Szweykowska–Kulińska 2000)
trnG(UCC) G2 intron Reverse ycf12_18Ri TGCACAGCTTACTGCTTTGG Pacak & Szweykowska–Kulińska (2000) Bryophytes (Pacak & Szweykowska–Kulińska 2000)
trnG(UCC) G2 intron Reverse trnG–R GCGGGTATAGTTTAGTGG Amamoto et al. (2022) Bryophytes (Amamoto et al. 2022)

nuclear

18S rRNA gene and ITS region

References

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