「PCR primers」の版間の差分

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185行目: 185行目:
 
| ''psbA''-''trnH''
 
| ''psbA''-''trnH''
 
| Forward
 
| Forward
| psbAF
+
| psbAF (as Forward primer named psbA-R in [[Newmaster_Ragupathy_2009|Newmaster & Ragupathy 2009]])
 
| GTTATGCATG AACGTAATGC TC
 
| GTTATGCATG AACGTAATGC TC
| [[Sang_Crawford_Stuessy_1997|Sang et al. (1997)]]
+
| [[Sang_Crawford_Stuessy_1997|Sang et al. (1997)]], [[Newmaster_Ragupathy_2009|Newmaster & Ragupathy (2009)]]
| Vascular plants ([[Sang_Crawford_Stuessy_1997|Sang et al. 1997]])
+
| Vascular plants ([[Sang_Crawford_Stuessy_1997|Sang et al. 1997]], [[Newmaster_Ragupathy_2009|Fabaceae by Newmaster & Ragupathy 2009]], [[Bruni_Galimberti_Caridi_Scaccabarozzi_DeMattia_Casiraghi_Labra_2015|multiflower honey Bruni et al. 2015]])
 
|-
 
|-
 
| ''psbA''-''trnH''
 
| ''psbA''-''trnH''
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| Vascular plants ([[Hamilton_1999|Hamilton 1999]])
 
| Vascular plants ([[Hamilton_1999|Hamilton 1999]])
 
|}
 
|}
 
 
psbA-R GTTATGCATGAACGTAATGCTC
 
  
 
== nuclear ==
 
== nuclear ==

2016年8月11日 (木) 12:58時点における版

広島大学 > デジタル自然史博物館 > 植物 > コケ植物(蘚苔類) > 情報

PCR primers

chloroplast

nuclear


PCR primers

chloroplast

rbcL (atpB-rbcL-trnR-zfpA)

rps4

rps4trnTtrnLtrnF

Table. Primers used for PCR amplification and sequencing
Analyzed region Forward / Reverse Primer name Sequence (5'–3') References For
rps4trnTtrnLtrnF Forward rps4_609RL TTAAGCTTGA CGAGAATAAT ATTC Masuzaki et al. (2010) Bryophytes (Masuzaki et al. 2010); Vascular plants (Lysimachia, Tsubota et al. 2015b)
trnTtrnLtrnF Forward trnT71F CCGCTATCGG AGTCGAACCG ATGACCATCG Tsubota et al. (2015b) Vascular plants (Lysimachia, Tsubota et al. 2015b)
trnLtrnF Forward a [trnT(UGU)F-a] CATTACAAAT GCGATGCTCT Taberlet et al. (1991) Vascular plants
trnLtrnF Forward c [trnL(UAA)5exonF-c] CGAAATCGGT AGACGCTACG Taberlet et al. (1991) Vascular plants
trnLtrnF Forward e [trnL(UAA)3exonF-e] GGTTCAAGTC CCTCTATCCC Taberlet et al. (1991) Vascular plants
rps4trnTtrnLtrnF Reverse trnF1F TGCCAGAAAC CAGATTTGAA CTGGTGACAC Tsubota et al. (2015b) Vascular plants (Lysimachia, Tsubota et al. 2015b)
rps4trnTtrnLtrnF Reverse trnF8F TCAGTCCTCT GCTCTACCAA CTGAGCTA Tsubota et al. (2015b) Vascular plants (Lysimachia, Tsubota et al. 2015b)
trnLtrnF Reverse f [trnF(GAA)R-f] ATTTGAACTG GTGACACGAG Taberlet et al. (1991) Vascular plants
trnLtrnF Reverse d [trnL(UAA)3exonR-d] GGGGATAGAG GGACTTGAAC Taberlet et al. (1991) Vascular plants
trnLtrnF Reverse b [trnL(UAA)5exonR-b] TCTACCGATT TCGCCATATC Taberlet et al. (1991) Vascular plants

matK

Table. Primers used for PCR amplification and sequencing
Analyzed region Forward / Reverse Primer name Sequence (5'–3') References For
trnK intron (including matK) trnK [tRNA-Lys(UAA)exon1] CCGACTAGTT CCGGGTTCGA Demesure et al. (1995) Bryophytes (Leucobryum, Oguri et al. 2013)
trnK aF ARWTTCATCC AAACCATTGA CAAGG Oguri et al. (2013) Bryophytes (Leucobryum, Oguri et al. 2013)
matK 410F TATCAATCTA TTCATTCYGT ATTTCCTTTT Oguri et al. (2013) Bryophytes (Leucobryum, Oguri et al. 2013)
matK 410R AAAAGGAAAT ACRGAATGAA TAGATTGATA Oguri et al. (2013) Bryophytes (Leucobryum, Oguri et al. 2013)
trnK aR ATTGCACACG GCTTTCTCTA TGT Oguri et al. (2013) Bryophytes (Leucobryum, Oguri et al. 2013)
trnK [tRNA-Lys(UAA)exon2] CAACGGTAGA GTACTCGGCT TTTA Demesure et al. (1995) Bryophytes (Leucobryum, Oguri et al. 2013)

psbA-trnH or trnH-psbA [trnH(GUG)-psbA intergenic region; trnH/psbA spacer; chloroplast photosystem II protein D1 (psbA) gene, partial cds; psbA-trnH intergenic spacer, complete sequence; and tRNA-His (trnH) gene, partial sequence]

Table. Primers used for PCR amplification and sequencing
Analyzed region Forward / Reverse Primer name Sequence (5'–3') References For
psbA-trnH Forward psbAFh5s GTTATGCATG AACGTAA Tsubota et al. (2015a) Vascular plants (Cotula, Tsubota et al. 2015a)
psbA-trnH Forward psbAF (as Forward primer named psbA-R in Newmaster & Ragupathy 2009) GTTATGCATG AACGTAATGC TC Sang et al. (1997), Newmaster & Ragupathy (2009) Vascular plants (Sang et al. 1997, Fabaceae by Newmaster & Ragupathy 2009, multiflower honey Bruni et al. 2015)
psbA-trnH Forward (as Reverse in Hamilton 1999) psb_A CGAAGCTCCA TCTACAAATG G Hamilton (1999) Vascular plants (Hamilton 1999)
psbA-trnH Reverse trnHRh6s CGCGCATGGT GGATTCA Tsubota et al. (2015a) Vascular plants (Cotula, Tsubota et al. 2015a)
psbA-trnH Reverse trnHR CGCGCATGGT GGATTCACAA ATC Sang et al. (1997) Vascular plants (Sang et al. 1997)
psbA-trnH Reverse (as Forward in Newmaster & Ragupathy 2009) trnH-F CGCGCATGGT GGATTCACAA TCC Newmaster & Ragupathy (2009) Vascular plants (Fabaceae by Newmaster & Ragupathy 2009, multiflower honey Bruni et al. 2015)
psbA-trnH Reverse (as Forward in Hamilton 1999) trn_H_(GUG) ACTGCCTTGA TCCACTTGGC Hamilton (1999) Vascular plants (Hamilton 1999)

nuclear

18S rRNA gene and ITS region

References


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