PCR primers

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2016年1月1日 (金) 01:33時点におけるChubo (トーク | 投稿記録)による版 (→‎rps4)
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PCR primers

chloroplast

nuclear


PCR primers

chloroplast

rbcL (atpB-rbcL-trnR-zfpA)

rps4

matK

Table. Primers used for PCR amplification and sequencing
Analyzed region Forward / Reverse Primer name Sequence (5'–3') References For
trnK intron (including matK) trnK [tRNA-Lys(UAA)exon1] CCGACTAGTT CCGGGTTCGA Demesure et al. (1995) Bryophytes (Leucobryum, Oguri et al. 2013)
trnK aF ARWTTCATCC AAACCATTGA CAAGG Oguri et al. (2013) Bryophytes (Leucobryum, Oguri et al. 2013)
matK 410F TATCAATCTA TTCATTCYGT ATTTCCTTTT Oguri et al. (2013) Bryophytes (Leucobryum, Oguri et al. 2013)
matK 410R AAAAGGAAAT ACRGAATGAA TAGATTGATA Oguri et al. (2013) Bryophytes (Leucobryum, Oguri et al. 2013)
trnK aR ATTGCACACG GCTTTCTCTA TGT Oguri et al. (2013) Bryophytes (Leucobryum, Oguri et al. 2013)
trnK [tRNA-Lys(UAA)exon2] CAACGGTAGA GTACTCGGCT TTTA Demesure et al. (1995) Bryophytes (Leucobryum, Oguri et al. 2013)

rps4trnTtrnLtrnF

Table. Primers used for PCR amplification and sequencing
Analyzed region Forward / Reverse Primer name Sequence (5'–3') References For
rps4trnTtrnLtrnF Forward rps4_609RL TTAAGCTTGA CGAGAATAAT ATTC Masuzaki et al. (2010) Bryophytes (Masuzaki et al. 2010); Vascular plants (Lysimachia, Tsubota et al. 2015b)
trnTtrnLtrnF Forward trnT71F CCGCTATCGG AGTCGAACCG ATGACCATCG Tsubota et al. (2015b) Vascular plants (Lysimachia, Tsubota et al. 2015b)
trnLtrnF Forward a [trnT(UGU)F-a] CATTACAAAT GCGATGCTCT Taberlet et al. (1991) Vascular plants
trnLtrnF Forward c [trnL(UAA)5exonF-c] CGAAATCGGT AGACGCTACG Taberlet et al. (1991) Vascular plants
trnLtrnF Forward e [trnL(UAA)3exonF-e] GGTTCAAGTC CCTCTATCCC Taberlet et al. (1991) Vascular plants
rps4trnTtrnLtrnF Reverse trnF1F TGCCAGAAAC CAGATTTGAA CTGGTGACAC Tsubota et al. (2015b) Vascular plants (Lysimachia, Tsubota et al. 2015b)
rps4trnTtrnLtrnF Reverse trnF8F TCAGTCCTCT GCTCTACCAA CTGAGCTA Tsubota et al. (2015b) Vascular plants (Lysimachia, Tsubota et al. 2015b)
trnLtrnF Reverse f [trnF(GAA)R-f] ATTTGAACTG GTGACACGAG Taberlet et al. (1991) Vascular plants
trnLtrnF Reverse d [trnL(UAA)3exonR-d] GGGGATAGAG GGACTTGAAC Taberlet et al. (1991) Vascular plants
trnLtrnF Reverse b [trnL(UAA)5exonR-b] TCTACCGATT TCGCCATATC Taberlet et al. (1991) Vascular plants

psbA-trnH [trnH(GUG)-psbA intergenic region, trnH/psbA spacer]

Table. Primers used for PCR amplification and sequencing
Analyzed region Forward / Reverse Primer name Sequence (5'–3') References For
psbA-trnH Forward psbAFh5s GTTATGCATG AACGTAA Tsubota et al. (2015a) Vascular plants (Lysimachia, Tsubota et al. 2015a)
psbA-trnH Forward psbAF GTTATGCATG AACGTAATGC TC Sang et al. (1997) Vascular plants (Sang et al. 1997)
psbA-trnH Forward (as Reverse in Hamilton (1999)) psb_A CGAAGCTCCA TCTACAAATG G Hamilton (1999) Vascular plants (Hamilton 1999)
psbA-trnH Reverse trnHRh6s CGCGCATGGT GGATTCA Tsubota et al. (2015a) Vascular plants (Lysimachia, Tsubota et al. 2015a)
psbA-trnH Reverse trnHR CGCGCATGGT GGATTCACAA ATC Sang et al. (1997) Vascular plants (Sang et al. 1997)
psbA-trnH Reverse (as Forward in Hamilton (1999)) trn_H_(GUG) ACTGCCTTGA TCCACTTGGC Hamilton (1999) Vascular plants (Hamilton 1999)

nuclear

18S rRNA gene and ITS region

References


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